Thank you for the reply.

> Another possibility is that you don't follow the correct storing method
> which is: rompath\setname\file 1... n.

I do believe it has something to do with this. All of the .nds files are in a single folder, which is where I have the path set to. Do I have to manually place every rom each into their own folders?

I tried putting a single rom into a folder, and it was indeed found as an incorrectly named rom. However, the program proceeded to fix it by renaming the folder, not the rom. The rest of the roms were once again read as unneeded files.

Is there a way I can make it read the single folder full of .nds files, and rename those as needed?